Since Mass Dynamics works from processed tabular data, we do not visualize raw MS features like TICs or XICs directly. However, we generate a suite of QC visualizations at the protein and peptide levels (if available), focused on experiment quality metrics such as:
- %CV distributions
- % valid values per group
- Relative Log Expression (RLE) plots
- Principal component analysis (PCA)
- Missingness and intensity distributions
These enable robust quality assessment of quantitation and sample consistency, based on the fields available in the provided data tables.