Spectronaut allows straightforward export options, allowing you to design and customize results according to your needs. Seamless uploading of Spectronaut DIA results into Mass Dynamics requires exporting the BGS Normal report after selecting the PG.Genes and PG.ProteinDescriptions boxes as part of the settings:
Exporting the Protein Quant Pivot report and mapping the uploaded files to set up your experiment in Mass Dynamics is also possible.
If you need help upload your data, follow these instructions to help us with our assisted upload service.