Our experiment creation experience is designed to make it even easier to upload pre-processed data from the most popular search tools in Mass Dynamics.
The experience automatically recognizes pre-processed data from popular processing software, including MaxQuant (now with the extended ability to handle fractionated samples), Spectronaut, DIA-NN and Bruker ProteoScape (TIMS-DIA-NN), and guides you through a few quick steps to complete your experiment creation in Mass Dynamics. You can learn more about what files to upload here.
When our system doesn't automatically recognize the data being uploaded, you will be guided to specify a few criteria to map your data files before creating an experiment, avoiding the need to re-format files before upload.
You can also leverage the Mass Dynamics team to help you upload your files to Mass Dynamics. Follow the instructions here.
