Mass Dynamics Help and Resources

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Mass Dynamics Help and Resources

Using Mass Dynamics

Using Mass Dynamics

Everything you need to know about using Mass Dynamics.

My organization is interested in deploying Mass Dynamics to our own cloud environment. What are the infrastructure requirements?

Workflows & scientific mechanics

What if I can't see my volcano plot?

Why are there so few parameters needed?

What are the advantages of leveraging the Mass Dynamics Discovery service for analysis?

Statistics & BioInformatics

How does Mass Dynamics leverage Limma?

How does the protein tracer plot combine p-values?

How do you use False Discovery Rates (FDR)?

What statistical methods does Mass Dynamics use?

Reporting and exporting

How do I export intensity data from the experiment results?

Can you download figures and which formats do you produce?

Experiment management

What are some of the benefits I expect to receive from creating a Protein List?

How do I create a Protein List?

Is it possible to delete the experiments that I generated?

Volcano Plot specifics

When using the volcano plots, how many dots are labelled?

Videos and tutorials

Videos and tutorials

Modules and Templates

Does Mass Dynamics have a Venn diagram module?

Uploading data

How can I access assistance with uploading my data?

What files do I need to upload for Bruker ProteoScape (TIMS DIA-NN) or DIA-NN processed results?

How do I access my TIMS DIA-NN output from ProteoScape data so that I can upload it into Mass Dynamics?

How does Mass Dynamics treat experiment outliers?

What files to upload to Mass Dynamics

Overview of the Experiment Creation process on Mass Dynamics

What types of experiments can MD process?

What files do I need to upload for Spectronaut DIA processed results?

How can I use the MD Format to upload my data?

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